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Migrate directories to Flatpak
The Flatpak package uses a different path for storing bottles.
In recent versions of the Flatpak and, the bottles are saved in a different location than the other packages, respecting the structure of the Flatpak package.
The other packages save the essential Bottles files, such as components, temps, and bottles, in the directory:
~/.local/share/bottles. Flatpak saves these files in the Flatpak
The migration is simple as it sounds - just move (or copy) the content of the path
~/.local/share/bottlesto the new one
# make a copy
yes | cp -rf \
# or move (using rsync to take care of existing files)
rsync -a \
Restart Bottles and that's it.